List of Publications -2012

1111. Venkatesan P, Meena Devi G. Proximal Support Vector Machine for Disease Classification. Int J Sci Technol 2012; 2(1):61-4.

1112. Unissa,AN, Hassan S, Selvakumar N. Elucidating isoniazid resistance in M ycobacterium tuberculosis using molecular docking approach. Int. J Pharma Bio Sci 2012;3(1):314-26.

1113. Raghavan S, Alagarasu K, Selvaraj P. Immunogenetics of HIV and HIV associated tuberculosis. Tuberculosis 2012;92(1):18-30.

1114. Rajendran V, Hassan S, Joseph J, Selvakumar N, Kumar V. In silico sequence and structure analysis for mycobacteriophages. Asian Pacific J Trop Biomed 2012; (Supplement 1):S377-9.

1115. Joseph J , Hassan S, Rajendran V, Kumar V. Functional assignment of the 64 mycobacteriophages into gene families. Asian Pacific J Trop Biomed 2012;(Supplement 1): S383-5.

1116. Bourai N, Jacobs WR Jr, Narayanan S. Deletion and overexpression studies on DacB2, a putative low molecular mass penicillin binding protein from Mycobacterium tuberculosis H 37 Rv. Microb Pathog 2012;52(2):109-116.

1117. Selvaraj P , Alagarasu K, Singh B. Stromal cell-derived factor-1 (SDF-1/CXCL12) gene polymorphisms in pulmonary tuberculosis patients of south India. Int J Immunogenet 2012;39(1):26-31.

1118. Nagarajan P, Anbarasu S, Kumar V, Selvakumar N. Recovery of Mycobacterium tuberculosis from Löwenstein-Jensen media contaminated with other organisms. Int J Tuberc Lung Dis 2012;16(2) :230–231.

1119. Aparna JC, Karthika KD, Dhandapaani G, Kannan P, Gupta UD, Gupta P, Ignacimuthu S, Narayanan S. Epitope based recombinant BCG vaccine elicits specific Th1 polarized immune responses in BALB/c mice. Vaccine 2012;30(7): 1364-70.

1120. Swaminathan S. Role of interferon gamma release assays in childhood tuberculosis. Indian J Pediatr 2012;79(2):250-2.

1121. Padmapriyadarsini C, Thomas A. Tuberculosis infection control practices in healthcare settings. J Indian Med Assoc 2012;110:112-4.

1122. Raman TT, Venkatesan P. Accelerated failure time frailty model in survival analysis. Int J Sci Technol 2012;2(2):65-9.

1123. Shiny C, Krushna NS, Haripriya K, Babu S , Elango S, Manokaran G, Narayanan RB. Recombinant Wolbachia surface protein (WSP)-induced T cell responses in Wuchereria bancrofti infections. Parasitol Res 2012; 110(2):787-97.

1124. Natarajan P, Anbalagan S, Narayanan S. Mitogen-activated protein kinases mediate Mycobacterium tuberculosis --induced CD44 surface expression in monocytes. J Biosci 2012;37(1): 41-54.

1125. Radhakrishnan R, Kumar MMP, Prabuseenivasan S, Anbarasu S., Nagarajan P, Devisangamithirai M, Sivagamasundari S, Ponnuraja C, Kumar V, Selvakumar N. Assessment of panel slides prepared by phenol ammonium sulphate and NALC methods for proficiency testing. Int J Tuberc Lung Dis 2012;16(3):394–397.

1126. Sundaramurthi JC, Brindha S, Reddy TB, Hanna LE. Informatics resources for tuberculosis – towards drug discovery. Tuberculosis 2012; 92(2): 133-138.

1127. Rao VG, Gopi PG, Bhat J, Yadav R, Selvakumar N, Wares DF. Selected risk factors associated with pulmonary tuberculosis among Saharia tribe of Madhya Pradesh, central India . Eur J Public Health 2012; 22(2):271-273.

1128. Pho MT, Swaminathan S, Kumarasamy N, Losina E, Ponnuraja C, Uhler LM, Scott CA, Mayer KH, Freedberg KA, Walensky RP. The cost-effectiveness of tuberculosis preventive therapy for HIV-infected individuals in southern India : A trial-based analysis. PLoS One 2012; 7(4):1-9.

1129. De Majumdar S, Vashist A, Dhingra S, Gupta R, Singh A, Challu VK, Ramanathan VD , Kumar P, Tyagi JS. Appropriate DevR (DosR)-mediated signaling determines transcriptional response, hypoxic viability and virulence of Mycobacterium tuberculosis . PLoS One 2012;7(4):1-14.

1130. Surendar J, Mohan V, Pavankumar N, Babu S, Aravindhan V. Increased levels of serum granulocyte-macrophage colony-stimulating factor is sssociated with activated peripheral dendritic cells in Type 2 diabetes subjects (CURES-99). Diabetes Technol Ther 2012; 14(4) :344-9.

1131. Kumar A, Kumar AMV, Gupta D, Kanchar A, Mohammed S, Srinath S, Tripathy S, Rajasekaran S, Chan PL, Swaminathan S, Dewan PK. Global guidelines for treatment of tuberculosis among persons living with HIV: unresolved issues. Int J Tuberc Lung Dis 2012;16(5):573-8.

1132. Azger D, Balaji S, Gomathi NS , Selvakumar N, Kumar V. Diagnostic luciferase reporter phage assay for active and non-replicating persistors to detect tubercle bacilli from sputum samples . Clin Microbiol Infect 2012;18(5):492-6.

1133. Balaji S, Gomathi S, Azger D, Selvakumar N, Kumar V. Phage lysin to substitute antibiotics to detect Mycobacterium tuberculosis from sputum samples using BACTEC MGIT 960 system. Clin Microbiol Infect 2012;18(5):497-501.

1134. Graham SM, Ahmed T, Amanullah F, Browning R, Cardenas V, Casenghi M, Cuevas LE, Gale M, Gie RP, Grzemska M, Handelsman E, Hatherill M, Hesseling AC, Jean-Philippe P, Kampmann B, Kabra SK, Lienhardt C, Lighter-Fisher J, Madhi S, Makhene M, Marais BJ, McNeeley DF, Menzies H, Mitchell C, Modi S, Mofenson L, Musoke P, Nachman S, Powell C, Rigaud M, Rouzier V, Starke JR, Swaminathan S, Wingfield C. Evaluation of tuberculosis diagnostics in children: 1. Proposed clinical case definitions for classification of intrathoracic tuberculosis disease. Consensus from an expert panel. J Infect Dis 2012; 205(Suppl 2) : S199 - S208 .

1135. McNerney R, Maeurer M, Abubakar I, Marais B, McHugh TD, Ford N, Weyer K, Lawn S, Grobusch MP, Memish Z, Squire SB, Pantaleo G, Chakaya J, Casenghi M, Migliori GB, Mwaba P, Zijenah L, Hoelscher M, Cox H, Swaminathan S, Kim PS, Schito M, Harari A, Bates M, Schwank S, O'Grady J, Pletschette M, Ditui L, Atun R, Zumla A. Tuberculosis diagnostics and biomarkers: needs, challenges, recent advances, and opportunities. J Infect Dis 2012; 205(Suppl 2) : S147 - 58.

1136. Cuevas LE, Browning R, Bossuyt P, Casenghi M, Cotton MF, Cruz AT, Dodd LE, Drobniewski F, Gale M, Graham SM, Grzemska M, Heinrich N, Hesseling AC, Huebner R, Jean-Philippe P, Kabra SK, Kampmann B, Lewinsohn D, Li M, Lienhardt C, Mandalakas AM, Marais BJ, Menzies HJ, Montepiedra G, Mwansambo C, Oberhelman R, Palumbo P, Russek-Cohen E, Shapiro DE, Smith B, Soto-Castellares G, Starke JR, Swaminathan S, Wingfield C, Worrell C. Evaluation of tuberculosis diagnostics in children: 2. Methodological issues for conducting and reporting research evaluations of tuberculosis diagnostics for intrathoracic tuberculosis in children. Consensus from an expert panel. J Infect Dis 2012;205 (Suppl 2) : S209-15.

1137. Zumla A, Abubakar I, Raviglione M, Hoelscher M, Ditiu L, McHugh TD, Squire SB, Cox H, Ford N, McNerney R, Marais B, Grobusch M, Lawn SD, Migliori GB, Mwaba P, O'Grady J, Pletschette M, Ramsay A, Chakaya J, Schito M, Swaminathan S, Memish Z, Maeurer M, Atun R. Drug-resistant tuberculosis--current dilemmas, unanswered questions, challenges, and priority needs. J Infect Dis 2012;205 (Suppl 2) : S228-40.

1138. Swaminathan S, Rekha VB. Antigen detection as a point-of-care test for TB: the case of lipoarabinomannan. Future Microbiol 2012;7 (5) : 559-64.

1139. Lakshmi R. , Kumar V, Rahman F, Ranjani R. Consistency of standard laboratory strain Mycobacterium tuberculosis H37Rv with ethionamide susceptibility testing. Indian J Med Res 2012;135:672-74.

1140. Muthuswamy M, Prabuseenivasan, Kumar V. Antibacterial activity of seleced medicinal plants used by the tribal people. Biomedicine 2012;32(2):199-206.

1141. Aravindhan V, Mohan V, Surendar J, Muralidhara Rao M , Anuradha R, DeepaM, Babu S. E ffect of Filarial Infection on Serum Inflammatory and Atherogenic Biomarkers in Coronary Artery Disease (CURES-121). Am J Trop Med Hyg 2012; 86(5) : 828 - 33.

1142. Schmidt C, Smith C, Barin B, Bakhtyari A, Bart PA, Bekker LG, Chomba E, Clumeck N, Ho D, Hoosen A, Jaoko W, Kaleebu P, Karita E, Keefer MC, van Lunzen J, McMichael A, Mehendale S, Peters B, Ramanathan VD , Robinson A, Rockstroh J, Vardas E, Vets E, Weber J, Graham BS, Than S, Excler JL, Kochhar S, Ho M, Heald A, Fast PE. Background morbidity in HIV vaccine trial participants from various geographic regions as assessed by unsolicited adverse events. Hum Vaccin Immunother 2012;8(5):630-8.

1143. Kumar D, Narayanan S. pknE , a serine / threonine kinase of Mycobacterium tuberculosis modulates multiple apoptotic paradigms. Infect Genet Evol 2012;12(4): 737-47.

1144. Basirudeen SAK, Paulkumaran P, Raja A. Interferon gamma and interferon gamma inducible protein-10 in detecting tuberculosis infection. J Infect 2012;64(6):573-9.

1145. Gomathi NS, Devi SM, Lakshmi R, Ranjani R, Wares DF, Kumar V,  Selvakumar N. Capilia test for identification of Mycobacterium tuberculosis in GIT™-positive cultures. Int J Tuberc Lung Dis 2012;16(6):788-92.

1146. Anuradha R, George JP, Pavankumar N, Kumaraswami V , Nutman TB, Babu S. Altered circulating levels of matrix metalloproteinases and inhibitors associated with elevated type 2 cytokines in lymphatic filarial disease. PLoS Negl Trop Dis 2012;6(6):1-9.

1147. Anuradha R, George PJ, Pavan Kumar N, Fay MP, Kumaraswami V , Nutman TB, Babu S. Circulating microbial products and acute phase proteins as markers of pathogenesis in lymphatic filarial disease. PLoS Pathog 2012;8(6):1-9.

1148. Ramana Rao PV, Sikhamani R, Raja A. Effect of recombinant cytokines on the expression of natural killer cell receptors from patients with TB or/and HIV infection. PLoS One 2012;7(6):1-9.

1149. Kumar SR, Gopalan N, Patrawalla P, Menon P, Mayer K, Swaminathan S. Immune reconstitution inflammatory syndrome in HIV-infected patients with and without prior tuberculosis. Int J STD AIDS 2012;23(6):419-23.

1150. Babu S, Anuradha R, Pavan Kumar N, George PJ, Kumaraswami V , Nutman TB. Toll-Like receptor- and filarial antigen-mediated, mitogen-activated protein kinase- and NF-κB-dependent regulation of angiogenic growth factors in filarial lymphatic pathology. Infect Immun 2012;80(7): 2509-18.

1151. Venkatesan P, Premalatha V. Genetic-neuro approach for disease classification. Int J Sci Technol 2012;2(7): 473-8.

1152. Sreenivas K, Vijayan K, Babu S , Narayanan RB. Recombinant Brugia malayi pepsin inhibitor (rBm33) induced monocyte function and absence of apoptotic cell death: An in vitro study. Microb Pathog 2012;53(1):19-27.

1153. Rekha VV, Rajaram K , Kripasankar AS , Parthasarathy R , Umapathy KC , Sheikh I , Selvakumar N , Victor M , Niruparani C , Sridhar R , Jawahar MS . Efficacy of the 6-month thrice-weekly regimen in the treatment of new sputum smear-positive pulmonary tuberculosis under clinical trial conditions. Natl Med J India 2012;25(4):196-200.

1154. Sundaramurthi JC, Brindha S, Shobitha SR, Swathi A, Ramanandan P, Hanna LE. In silico identification of potential antigenic proteins and promiscuous CTL epitopes in M ycobacterium tuberculosis. Infect Genet Evol 2012; 12(6): 1312-8 .

1155. Hassan S, Debnath A, Mahalingam V, Hanna LE. Computational structural analysis of proteins of Mycobacterium tuberculosis and a resource for identifying off-targets. J Mol Model 2012;18(8): 3993-4004 and Erratum 4005.

1156. Lagrange PH, Thangaraj SK, Dayal R, Despande A, Ganguly NK, Girardi E, Joshi B, Katoch K, Katoch VM, Kumar M, Lakshmi V, Leportier M, Longuet C, Malladi SV, Mukerjee D, Nair D, Raja A, Raman B, Rodrigues C, Sharma P, Singh A, Singh S, Sodha A, Kabeer BS, Vernet G, Goletti D. A toolbox for tuberculosis diagnosis: An Indian multicentric study (2006-2008): Microbiological results. PLoS One 2012;7(8):1-14.

1157. Manivannan S, Rao NV, Ramanathan VD . Role of complement activation and antibody in the interaction between Mycobacterium tuberculosis and human macrophages. Indian J Exp Biol 2012;50(8):542-50.

1158. Rao VG, Bhat J, Yadav R, Gopi PG, Selvakumar N , Bhondeley MK, Anjinappa SM, Ramachandra J, Chadha VK, Wares F. Prevalence of pulmonary tuberculosis – A baseline survey in central India. PLoS One 2012;7(8):1-6.

1159. Venkatesan P, Ramamurthy D, Sundaram N. HIV/AIDS projection in Tamilnadu using back calculation method. Indian J Sci Technol 2012; 5(8):3157-3162.

1160. Azger D, Nagarajan P, Das D, Kumar V, Selvakumar N. Retrieval of Mycobacterium tuberculosis cultures suspended in phosphate buffered saline. Int J Mycobacteriol 2012;1(3):149-51.

1161. Selvakumar N, Syam Sunder A, Gomathi S, Ponnuraja C, Kumar V. Performance indicators of fluorescence microscopy for sputum samples in pulmonary tuberculosis. Int J Mycobacteriol 2012; 1(3):143-5.

1162. Radhakrishnan M, Priya J, Balagurunathan R, Kumar V. Miniaturized fermentation in eppendorf tubes for the detection of antagonistic actinomycetes. Int J Bioassays 2012;1(9):30-5.

1163. Ramachandran G, Swaminathan S. Role of pharmacogenomics in the treatment of tuberculosis: a review. Pharmacogenomics Pers Med 2012;5:89–98

1164. Gomathi S, Rehman F , Kumar V, Selvakumar N . Equivalence of acid alone or acid-alcohol as decolourizing agent in Ziehl-Neelsen method. Indian J Tuberc 2012;59(4):219-23.

1165. Sundaramurthi JC, Swaminathan S, Hanna LE. Resistance-associated epitopes of HIV-1C-highly probable candidates for a multi-epitope vaccine. Immunogenetics 2012;64(10):767-72.

1166. Ganga Devi NP, Ramesh K , Sudha S, Ponnuraja C, Padmapriyadarsini C, Swaminathan S. CD4 + T-lymphocyte count/CD8 + T-lymphocyte count ratio: surrogate for HIV infection in infants? J Trop Pediatr 2012;58(5):394-7.

1167. Kolappan C, Subramani R , Chandrasekaran V, Thomas A. Trend in tuberculosis infection prevalence in a rural area in South India after implementation of the DOTS strategy. Int J Tuberc Lung Dis 2012;16(10):1315-19.

1168. Swetha S, Babu S, Das SD. Comparison of localized versus systemic levels of Matrix metalloproteinases (MMPs), its tissue inhibitors (TIMPs) and cytokines in tuberculous and non-tuberculous pleuritis patients. Hum Immunol 2012;73(10):985-91.

1169. Selvaraj P , Harishankar M, Singh B, Banurekha VV, Jawahar MS. Effect of vitamin D 3 on chemokine expression in pulmonary tuberculosis. Cytokine 2012;60(1):212-9.

1170. George PJ, Anuradha R, Kumar NP, Kumaraswami V, Nutman TB, Babu S . Evidence of microbial translocation associated with perturbations in T cell and antigen-presenting cell homeostasis in hookworm infections. PLoS Negl Trop Dis 2012;6(10):1-10.

1171. Kannan P, Malini V, Narayanan S. Characterization of Ffh of Mycobacterium tuberculosis and its interaction with 4.5S RNA. Microbiol Res 2012;167(9):520-5.

1172. Refaya AK , Sivakumar S, Sundararaman B, Narayanan S. Polymorphism in the RD1 locus and its effect on downstream genes among South Indian clinical isolates of Mycobacterium tuberculosis . J Med Microbiol 2012;61(Pt 10):1352-9.

1173. Gomathi S, Rehman F , Kumar V, Selvakumar N. Equivalence of acid alone or acid-alcohol as decolourizing agent in Ziehl - Neelsen method. Indian J Tuberc 2012;59 (4):219-223.

1174. Das D, Selvakumar N . Can LED fluorescence microscopy replace Ziehl-Neelsen microscopy in tuberculosis detection? Int J Tuberc Lung Dis 2012;16(11):1558.

1175. Thomas B, Mimiaga MJ, Mayer KH, Perry NS, Swaminathan S, Safren SA. The influence of stigma on HIV risk behavior among men who have sex with men in Chennai , India . AIDS Care 2012;24(11):1401-6.

1176. Cuevas LE, Petrucci R, Swaminathan S . Tuberculosis diagnostics for children in high-burden countries: what is available and what is needed. Paediatr Int Child Health 2012;32(Suppl 2):S30-7.

1177. Babu S , Nutman TB . Immunopathogenesis of lymphatic filarial disease. Semin Immunopathol 2012;34(6):847-861.

1178. Swaminathan S, Menon PA, Narendran G, Venkatesan P, Ramesh K umar S, Ranjani R, Ponnuarja C, Sheik I, Padmapriyadarsini C, Ganga Devi NP, Elangovan T, Pho MT, Wares F, Narayanan PR. Efficacy of a Six-Month versus a 36-Month Regimen for Prevention of Tuberculosis in HIV-Infected Persons in India: A Randomized Clinical Trial. PLoS One 2012;7(12):1-9.

1179. Senbagavalli P , Hilda JN, Ramanathan VD, Kumaraswami V , Nutman TB, Babu S . Immune complexes isolated from patients with pulmonary tuberculosis modulate the activation and function of normal granulocytes. Clin Vaccine Immunol 2012;19(12):1965-71.

1180. Selvakumar N, Silambuchelvi K, Gomathi S, Syam Sunder A, Anbarasu S, Banu Rekha V, Ponnuraja C,  Kumar V. Quality indicators in a mycobacteriology laboratory supporting clinical trials for pulmonary tuberculosis. Int J Mycobacteriol 2012;1(4):185-9.

1181. Hilda JN, Selvaraj A, Das SD Mycobacterium tuberculosis H37Rv is more effective compared to vaccine strains in modulating neutrophil functions: An in vitro study. FEMS Immunol Med Microbiol 2012;66(3):372–81.

1182. Mohan SB, Ravi Kumar BV, Dinda SC, Naik D, Prabu Seenivasan S , Kumar V, Rana DN, Brahmkshatriya PS. Microwave-assisted synthesis, molecular docking and antitubercular activity of 1,2,3,4-tetrahydropyrimidine-5-carbonitrile derivatives. Bioorg Med Chem Lett 2012;22(24):7539-42.

1183. Ramachandran G, Hemanth Kumar AK, Srinivasan R, Geetharani A, Sugirda P, Nandhakumar B, Nandini R, Tharani CB. Effect of rifampicin & isoniazid on the steady state pharmacokinetics of moxifloxacin. Indian J Med Res 2012;136:979-84.

1184. Hemanth Kumar AK, Sudha V, Ramachandran G. Simple and rapid liquid chromatography method for simultaneous determination of isoniazid and pyrazinamide in plasma. SAARC J Tuberc Lung Dis HIV/AIDS 2012; 9(2):26-9.

1185. Ramakrishnan K, Shenbagarathai R, Kavitha K, Thirumalaikolundu-subramanian P, Rathinasabapati R . Selenium Levels in Persons with HIV/Tuberculosis in India, Madurai City. Clin Lab 2012;58(1-2):165-168.

1186. Shyamala G, Rao VB, Vadivelu J. Impact of Health Education on the knowledge of TB among sputum positive pulmonary tuberculosis patients and their care givers. The Nursing Journal of India.2012;CIII:160-162.

 1187. Raghu B, Venkatesan P. Relationship between cigarette smoking and novel risk factors for cardiovascular disease. J Biomed Sci.2012;1:1-4.

1188. Tintu T, Venkatesan P. Classification of microarray data using support vector machine. E J Pharmacol Therapy.2012;5:25-28.

1189. Sundaram N, Venkatesan P. Bayesian regression approach for modeling response time in clinical trials. Int J Comput Mathemat App.2012;6:65-78.

1190. Ramamurthy D, Venkatesan P. Stochastic model for the growth of human immunodeficiency virus in infected individuals. Int J Comput Mathemat App.2012;6:79-88.

1191. Venkatesan P, Meena Devi G. Disease classification by least square support vector machines. Int J Comput Mathemat App. 2012; 6:105-112.

1192. Thomas B, Mimiaga MJ, Mayer KH, Johnson CV, Closson EF, Menon S, Mani J, Vijaylakshmi R, Dilip M, Betancourt T, Safren SA. Ensuring it works: A community-based approach to HIV prevention intervention development for men who have sex with men in Chennai, India, AIDS Edu Prev.2012;24:483-499.